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Is there a way in the Fab3000 software to do Copper Area Calculations on each layer? I would like to use that info to add into my stackup program I developed in Excel format! With the ability to have the Copper area on each layer would target a more accurate thickness usage of the pre-pregs sandwiched between layers for more accuracy on the final overall thickness of the multilayers.

You can extract the copper of each layer using menu:  Fabrication / Calculate Copper Area..

https://numericalsoftware-update.s3.amazonaws.com/tutorials/2015-11-17_12-09-11.mp4